htseq-clip is a toolset for the analysis of eCLIP/iCLIP datasets. This python package can be used to generate files necessary for data analysis using the companion R/Bioconductor package DEWSeq


htseq-clip data flow diagram

Matthias Hentze and Wolfgang Huber Labs, EMBL Heidelberg.

We would also like to acknowledge contributions from Marko Fritz and Nadia Ashraf in developing this package.